PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021004-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 213aa    MW: 24008.9 Da    PI: 6.5225
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021004-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.1e-111763455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   + n r r+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  NNU_021004-RA 17 TQNYRKRKRREKLSQRFIALLAIVPGL-----KKMDKASVLGDAIKYLKQLQ 63
                   67999**********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.4371362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-151678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-91667No hitNo description
PfamPF000109.6E-91763IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-131979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-131968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDEAVSSANM IFPSYVTQNY RKRKRREKLS QRFIALLAIV PGLKKMDKAS VLGDAIKYLK  60
QLQERVKILE EQTVKKRVES VVLVKRSQIS ADNDNSSSDE NNLGGGRSDD EAALSEIEAR  120
VSDKDVLIRV HCEKQKGTGR DRETPPDCCQ QQRDGSQAEA HAGDPQHQHP PAATRIYETD  180
ELTTTMDALQ NALPDTNPQY DIPSREQYQR LCP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025RKRKRR
22227RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271548.11e-68PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0721e-37BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A061DHY33e-50A0A061DHY3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGSolyc01g106460.2.12e-49(Solanum lycopersicum)
STRINGPGSC0003DMT4000130742e-48(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-35bHLH family protein